2FSH

Complex SecA:AMP-PNP from Escherichia coli


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.7955.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.02α = 90
b = 90.01β = 100.52
c = 163.02γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-08-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.976200ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122090.50.05111.112.3414384313019347.066
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.161.50.3312.31.74

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2FSG219.97143843130193653890.50.2060.2040.255RANDOM43.523
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.948
r_dihedral_angle_3_deg19.158
r_dihedral_angle_4_deg17.18
r_dihedral_angle_1_deg7.571
r_scangle_it4.575
r_scbond_it3.188
r_angle_refined_deg2.074
r_mcangle_it1.99
r_mcbond_it1.666
r_angle_other_deg1.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.948
r_dihedral_angle_3_deg19.158
r_dihedral_angle_4_deg17.18
r_dihedral_angle_1_deg7.571
r_scangle_it4.575
r_scbond_it3.188
r_angle_refined_deg2.074
r_mcangle_it1.99
r_mcbond_it1.666
r_angle_other_deg1.002
r_mcbond_other0.347
r_symmetry_hbond_refined0.291
r_symmetry_vdw_other0.24
r_nbd_refined0.236
r_symmetry_vdw_refined0.229
r_nbd_other0.213
r_nbtor_refined0.188
r_xyhbond_nbd_refined0.181
r_chiral_restr0.126
r_nbtor_other0.094
r_xyhbond_nbd_other0.085
r_bond_refined_d0.026
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11235
Nucleic Acid Atoms
Solvent Atoms431
Heterogen Atoms62

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction