2FM9

Structure of Salmonella SipA residues 48-264


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.6298hanging drops formed from mixing a 1:1 volume ratio of 20mg/ml protein with an equilibration buffer consisting of 20% PEG6000, 20% glycerol, Na-citrate pH 5.6 and 0.01M adenosine-5 -triphosphate disodium salt (ATP) as an additive., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.9558.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.08α = 90
b = 71.08β = 90
c = 95.439γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X9A0.979NSLSX9A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1299990.0311920919209
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0799.90.3571888

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT250191661916698298.990.2040.2040.2020.255RANDOM45.37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.60.30.6-0.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.773
r_dihedral_angle_4_deg17.325
r_dihedral_angle_3_deg16.22
r_dihedral_angle_1_deg4.679
r_scangle_it4.668
r_scbond_it3.445
r_angle_refined_deg1.784
r_mcangle_it1.729
r_mcbond_it1.57
r_angle_other_deg0.907
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.773
r_dihedral_angle_4_deg17.325
r_dihedral_angle_3_deg16.22
r_dihedral_angle_1_deg4.679
r_scangle_it4.668
r_scbond_it3.445
r_angle_refined_deg1.784
r_mcangle_it1.729
r_mcbond_it1.57
r_angle_other_deg0.907
r_mcbond_other0.342
r_symmetry_vdw_other0.249
r_nbd_refined0.228
r_xyhbond_nbd_refined0.207
r_nbtor_refined0.178
r_nbd_other0.176
r_symmetry_vdw_refined0.165
r_chiral_restr0.107
r_nbtor_other0.095
r_symmetry_hbond_refined0.076
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1544
Nucleic Acid Atoms
Solvent Atoms89
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SOLVEphasing