X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5298PED 3350, 10 mM NaCl, 50mM MgCl2, Tris-Bis pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5150.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.352α = 90
b = 100.001β = 90
c = 206.549γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-11-01MSINGLE WAVELENGTH
21x-ray100MSINGLE WAVELENGTH
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.074NSLSX29A
2SYNCHROTRONNSLS BEAMLINE X9A0.98NSLSX9A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.255097.70.0590.04620.84.6894398943938.075
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.252.33990.3350.2773.544.68902

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.25508932789327448397.720.1890.1870.1870.233RANDOM37.744
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.06-1.070.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.905
r_dihedral_angle_4_deg18.423
r_dihedral_angle_3_deg16.545
r_dihedral_angle_1_deg5.816
r_scangle_it2.663
r_scbond_it1.93
r_angle_refined_deg1.38
r_mcangle_it1.017
r_mcbond_it0.758
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.905
r_dihedral_angle_4_deg18.423
r_dihedral_angle_3_deg16.545
r_dihedral_angle_1_deg5.816
r_scangle_it2.663
r_scbond_it1.93
r_angle_refined_deg1.38
r_mcangle_it1.017
r_mcbond_it0.758
r_nbtor_refined0.302
r_symmetry_vdw_refined0.228
r_nbd_refined0.203
r_symmetry_hbond_refined0.172
r_xyhbond_nbd_refined0.152
r_chiral_restr0.09
r_bond_refined_d0.017
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12957
Nucleic Acid Atoms
Solvent Atoms724
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
SHELXEmodel building
RESOLVEphasing