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Structure of a Protein of Unknown Function from Bacteroides thetaiotaomicron.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.01M Cobalous Chloride hexahydrate, 0.1 M MES, 1.8M Ammonium Sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.97 37.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.172 α = 90 b = 62.172 β = 90 c = 36.505 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-12-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97928, 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50 99.4 38567 38567
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.282 95.27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.25 50 38567 36643 1924 99.4 0.16871 0.16871 0.16804 0.1669 0.18127 0.1798 RANDOM 22.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -0.63 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.566 r_dihedral_angle_3_deg 14.948 r_dihedral_angle_4_deg 8.145 r_dihedral_angle_1_deg 5.29 r_scangle_it 2.252 r_scbond_it 1.648 r_angle_refined_deg 1.259 r_mcangle_it 0.989 r_mcbond_it 0.661 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.566 r_dihedral_angle_3_deg 14.948 r_dihedral_angle_4_deg 8.145 r_dihedral_angle_1_deg 5.29 r_scangle_it 2.252 r_scbond_it 1.648 r_angle_refined_deg 1.259 r_mcangle_it 0.989 r_mcbond_it 0.661 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.256 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1235 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELX phasing CCP4 phasing MLPHARE phasing DM phasing RESOLVE phasing O model building ARP/wARP model building Coot model building