☰ Navigation Tabs
K Intermediate Structure of Sensory Rhodopsin II/Transducer Complex in Combination with the Ground State Structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H2S PDB Entry: 1H2S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 295 150 MM NACL, 25 MM NAKPI 5.1
0.8% B-OCTYLGLUCOSID , MONOVACCENIN (CUBIC PHASE)
PRECIPITATED BY 1 M NA/KPI 5.8 , in cubic lipidic phase, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.01 38.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.34 α = 90 b = 47.03 β = 90 c = 53.82 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 34.06 95.4 0.091 3.8 22023 21010 2 1.8 20
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 98.7 0.494 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry: 1H2S 2 34.06 2 21010 20360 985 92.2 0.219 0.218 0.218 0.245 RANDOM 26.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.09 2.82 -5.91
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 16.8 c_scangle_it 3.62 c_scbond_it 2.58 c_mcangle_it 2.03 c_mcbond_it 1.35 c_angle_deg 1.2 c_improper_angle_d 0.93 c_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2001 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 40
Software Software Software Name Purpose CNS refinement MOSFLM data reduction CCP4 data scaling CNS phasing