2F8F

Crystal structure of the Y10F mutant of the gluathione s-transferase from schistosoma haematobium


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.4298ammonium sulphate 2.1 M, 100 mM tris, 5mM b-mercaptoethanol, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2946.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.227α = 90
b = 77.594β = 94.26
c = 53.143γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-06-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2R1.0ELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.99353.45296.642951423175
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.15498.81

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entry: 1OE72.153.452951423175123196.640.224230.220970.28751RANDOM39.081
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.82.32-1.891.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.872
r_dihedral_angle_4_deg18.005
r_dihedral_angle_3_deg16.106
r_dihedral_angle_1_deg5.169
r_scangle_it2.593
r_scbond_it1.708
r_mcangle_it1.352
r_angle_refined_deg1.245
r_mcbond_it0.798
r_symmetry_hbond_refined0.345
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.872
r_dihedral_angle_4_deg18.005
r_dihedral_angle_3_deg16.106
r_dihedral_angle_1_deg5.169
r_scangle_it2.593
r_scbond_it1.708
r_mcangle_it1.352
r_angle_refined_deg1.245
r_mcbond_it0.798
r_symmetry_hbond_refined0.345
r_nbtor_refined0.304
r_symmetry_vdw_refined0.275
r_nbd_refined0.217
r_xyhbond_nbd_refined0.177
r_chiral_restr0.093
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3219
Nucleic Acid Atoms
Solvent Atoms148
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing