2F2O

Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP298VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1743.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.237α = 90
b = 42.769β = 110.39
c = 71.15γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X8CNSLSX8C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1767.4297.60.05718574

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2F2P2.1767.421620016200177497.880.212350.212350.203510.28856RANDOM31.615
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.861.2-0.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.504
r_scangle_it7.122
r_scbond_it4.858
r_angle_refined_deg3.065
r_mcangle_it2.848
r_mcbond_it1.731
r_angle_other_deg1.344
r_symmetry_vdw_other0.309
r_nbd_refined0.283
r_nbd_other0.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.504
r_scangle_it7.122
r_scbond_it4.858
r_angle_refined_deg3.065
r_mcangle_it2.848
r_mcbond_it1.731
r_angle_other_deg1.344
r_symmetry_vdw_other0.309
r_nbd_refined0.283
r_nbd_other0.27
r_symmetry_vdw_refined0.261
r_xyhbond_nbd_refined0.241
r_chiral_restr0.184
r_metal_ion_refined0.145
r_nbtor_other0.116
r_symmetry_hbond_refined0.105
r_bond_refined_d0.048
r_gen_planes_refined0.013
r_bond_other_d0.003
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2490
Nucleic Acid Atoms
Solvent Atoms178
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing