X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.629810mg/ml protein, 0.1 M Tris, 0.2 M LiSO4, 28 % PEG 3350, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2344.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.884α = 90
b = 78.865β = 91.64
c = 78.941γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2005-04-01MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97932, 0.97948APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.857824599

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8535.2721007113090.030.180810.176970.25099RANDOM36.558
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.12-2.14-1.83-0.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.623
r_dihedral_angle_4_deg15.385
r_dihedral_angle_3_deg14.916
r_dihedral_angle_1_deg6.987
r_scangle_it4.013
r_scbond_it2.965
r_mcangle_it1.744
r_angle_refined_deg1.696
r_mcbond_it1.254
r_symmetry_hbond_refined0.347
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.623
r_dihedral_angle_4_deg15.385
r_dihedral_angle_3_deg14.916
r_dihedral_angle_1_deg6.987
r_scangle_it4.013
r_scbond_it2.965
r_mcangle_it1.744
r_angle_refined_deg1.696
r_mcbond_it1.254
r_symmetry_hbond_refined0.347
r_nbtor_refined0.309
r_symmetry_vdw_refined0.228
r_nbd_refined0.224
r_xyhbond_nbd_refined0.204
r_chiral_restr0.119
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2215
Nucleic Acid Atoms
Solvent Atoms329
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing