2F1F

Crystal structure of the regulatory subunit of acetohydroxyacid synthase isozyme III from E. coli


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.529310-25 mg/ml protein in 0.5 M MgCl2, 1:1 mixed with reservoir made up of 30-40% PEG400, 0.4-0.6 M MgCl2, 100 mM Tris-HCl pH 8.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.6954.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.6α = 90
b = 98.6β = 90
c = 80γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4bent crystal2004-11-30MMAD
21x-rayMSINGLE WAVELENGTH
31
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.97924, 0.97942, 0.93928ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.754099.20.0630.05715.16.15383133831338.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.751.81000.5410.593.36.23076

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.75203831338302191799.260.1740.1740.1710.227RANDOM41.821
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-0.140.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.31
r_dihedral_angle_4_deg22.608
r_dihedral_angle_3_deg17.856
r_dihedral_angle_1_deg8.516
r_scangle_it7.705
r_scbond_it5.557
r_mcangle_it3.883
r_mcbond_it2.6
r_angle_refined_deg2.118
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.31
r_dihedral_angle_4_deg22.608
r_dihedral_angle_3_deg17.856
r_dihedral_angle_1_deg8.516
r_scangle_it7.705
r_scbond_it5.557
r_mcangle_it3.883
r_mcbond_it2.6
r_angle_refined_deg2.118
r_nbtor_refined0.307
r_nbd_refined0.257
r_chiral_restr0.243
r_symmetry_vdw_refined0.227
r_symmetry_hbond_refined0.222
r_xyhbond_nbd_refined0.219
r_bond_refined_d0.025
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2474
Nucleic Acid Atoms
Solvent Atoms258
Heterogen Atoms52

Software

Software
Software NamePurpose
XSCALEdata scaling
SHARPphasing
REFMACrefinement
PDB_EXTRACTdata extraction