2F0C

Structure of the Receptor Binding Protein (ORF49, bbp) from lactophage tp901-1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72931 M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8934.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.464α = 90
b = 78.716β = 90
c = 81.656γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42005-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-30.931ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65811000.0747.456893
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.741000.2822.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2BSD residues 162-2641.65405401054010288299.970.158020.158020.156360.18874RANDOM11.434
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.31-0.17-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.825
r_dihedral_angle_4_deg14.927
r_dihedral_angle_3_deg10.366
r_dihedral_angle_1_deg6.384
r_scangle_it3.079
r_scbond_it2.196
r_angle_refined_deg1.286
r_mcangle_it1.223
r_mcbond_it1
r_angle_other_deg0.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.825
r_dihedral_angle_4_deg14.927
r_dihedral_angle_3_deg10.366
r_dihedral_angle_1_deg6.384
r_scangle_it3.079
r_scbond_it2.196
r_angle_refined_deg1.286
r_mcangle_it1.223
r_mcbond_it1
r_angle_other_deg0.73
r_symmetry_hbond_refined0.286
r_symmetry_vdw_refined0.243
r_nbd_refined0.22
r_nbd_other0.208
r_xyhbond_nbd_refined0.173
r_nbtor_refined0.171
r_mcbond_other0.164
r_symmetry_vdw_other0.142
r_nbtor_other0.084
r_chiral_restr0.075
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3249
Nucleic Acid Atoms
Solvent Atoms715
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing