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Crystal structure of the phosphorylated CLK3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z57 pdb entry 1z57
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 1.8M (NH4)3(cit), pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.5 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.18 α = 90 b = 110.998 β = 90 c = 161.544 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Si(111) 2005-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97640 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 32.82 99.6 0.0495 0.0495 13.59 23758 23665
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 100 0.3432 2769
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1z57 2.35 32.82 23758 22495 1171 99.66 0.22653 0.22653 0.22479 0.26028 0.2917 RANDOM 50.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.26 1.95 3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.022 r_dihedral_angle_4_deg 23.117 r_dihedral_angle_3_deg 16.505 r_scangle_it 6.778 r_dihedral_angle_1_deg 5.967 r_scbond_it 4.991 r_mcangle_it 2.98 r_mcbond_it 1.894 r_angle_refined_deg 1.235 r_angle_other_deg 0.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.022 r_dihedral_angle_4_deg 23.117 r_dihedral_angle_3_deg 16.505 r_scangle_it 6.778 r_dihedral_angle_1_deg 5.967 r_scbond_it 4.991 r_mcangle_it 2.98 r_mcbond_it 1.894 r_angle_refined_deg 1.235 r_angle_other_deg 0.926 r_mcbond_other 0.472 r_symmetry_vdw_other 0.283 r_nbd_refined 0.21 r_symmetry_hbond_refined 0.19 r_nbtor_refined 0.179 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.155 r_symmetry_vdw_refined 0.131 r_nbtor_other 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2085 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing