2ERW

Crystal Structure of Infestin 4, a factor XIIa inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.630330% PEG 4000, 0.1 M ammonium acetate, 0.1 M sodium cacodylate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 303K
Crystal Properties
Matthews coefficientSolvent content
2.6854.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 25.765α = 90
b = 45.377β = 90
c = 56.771γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-09-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.427LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.440990.03752.57.1137561361815.315
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.45910.3675.75.31229

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1TBR1.435.71136101357467699.750.18060.18060.180140.1895RANDOM24.051
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.030.21-0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.224
r_dihedral_angle_4_deg15.321
r_dihedral_angle_3_deg14.454
r_dihedral_angle_1_deg5.936
r_scangle_it2.954
r_scbond_it1.764
r_angle_refined_deg1.486
r_mcangle_it1.219
r_mcbond_it0.74
r_nbtor_refined0.322
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.224
r_dihedral_angle_4_deg15.321
r_dihedral_angle_3_deg14.454
r_dihedral_angle_1_deg5.936
r_scangle_it2.954
r_scbond_it1.764
r_angle_refined_deg1.486
r_mcangle_it1.219
r_mcbond_it0.74
r_nbtor_refined0.322
r_nbd_refined0.244
r_symmetry_vdw_refined0.177
r_symmetry_hbond_refined0.146
r_xyhbond_nbd_refined0.127
r_chiral_restr0.083
r_bond_refined_d0.014
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms402
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing