2EFZ
Solution Structure of an M-1 Conotoxin with a novel disulfide linkage
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2.0mM; 0.01% TFA; 90% H2O, 10% D2O | 90% H2O/10% D2O | 3.0 | ambient | 294 | ||
2 | 2D TOCSY | 2.0mM; 0.01% TFA; 90% H2O, 10% D2O | 90% H2O/10% D2O | 3.0 | ambient | 294 | ||
3 | DQF-COSY | 2.0mM; 0.01% TFA; 90% H2O, 10% D2O | 90% H2O/10% D2O | 3.0 | ambient | 294 | ||
4 | 2D NOESY | 2.0mM; 0.01% TFA; 99.99% D2O | 99.99% D2O | 3.0 | ambient | 294 | ||
5 | 2D TOCSY | 2.0mM; 0.01% TFA; 99.99% D2O | 99.99% D2O | 3.0 | ambient | 294 | ||
6 | DQF-COSY | 2.0mM; 0.01% TFA; 99.99% D2O | 99.99% D2O | 3.0 | ambient | 294 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics | The structure are based on a total of 218 constraints, 190 are NOE-derived distance constraints, 13 dihedral constraints, 15 constraints from 3 hydrogen bonds and 3 disulfide bonds. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Inc. |
2 | processing | TopSpin | 1.3B | Bruker Inc. |
3 | data analysis | Sparky | 3.113 | Donald Kneller,Tack kuntz,Tom Forrin,Tom Goddard |
4 | structure solution | DYANA | 1.5 | Peter Guntert,Christian Mumenthaler and Torsten Herrmann |
5 | refinement | Amber | 5.0 |