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Methanethiol-CYS 112 inhibition complex of E. coli ketoacyl synthase III (FABH) and Coenzyme A (high concentration (1.7mM) soak)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GYO PDB ENTRY 2GYO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 1.7M AMMONIUM SULFATE, 2% PEG 400, 100MM NA HEPES, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 46.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.212 α = 90 b = 81.216 β = 90 c = 123.36 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV RIGAKU VARIMAX CONFOCAL OPTICS 2005-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 49.12 81.3 0.048 17.1 4.03 44340 36317 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 82.3 0.29 4.6 4 4379
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GYO 2 20 34473 1801 81.91 0.19895 0.19651 0.2275 0.24567 0.2736 RANDOM 34.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.93 -1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.468 r_dihedral_angle_4_deg 17.903 r_dihedral_angle_3_deg 14.123 r_dihedral_angle_1_deg 5.881 r_scangle_it 4.102 r_scbond_it 2.939 r_mcangle_it 1.853 r_mcbond_it 1.222 r_angle_refined_deg 1.086 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.468 r_dihedral_angle_4_deg 17.903 r_dihedral_angle_3_deg 14.123 r_dihedral_angle_1_deg 5.881 r_scangle_it 4.102 r_scbond_it 2.939 r_mcangle_it 1.853 r_mcbond_it 1.222 r_angle_refined_deg 1.086 r_nbtor_refined 0.29 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.11 r_symmetry_hbond_refined 0.104 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4636 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 62
Software Software Software Name Purpose CrystalClear data collection CNS refinement REFMAC refinement d*TREK data reduction d*TREK data scaling CNS phasing