2EFT

Methanethiol-CYS 112 inhibition complex of E. coli ketoacyl synthase III (FABH) and Coenzyme A (high concentration (1.7mM) soak)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72951.7M AMMONIUM SULFATE, 2% PEG 400, 100MM NA HEPES, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.346.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.212α = 90
b = 81.216β = 90
c = 123.36γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVRIGAKU VARIMAX CONFOCAL OPTICS2005-01-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1249.1281.30.04817.14.03443403631739
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0782.30.294.644379

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2GYO22034473180181.910.198950.196510.24567RANDOM34.876
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.280.93-1.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.468
r_dihedral_angle_4_deg17.903
r_dihedral_angle_3_deg14.123
r_dihedral_angle_1_deg5.881
r_scangle_it4.102
r_scbond_it2.939
r_mcangle_it1.853
r_mcbond_it1.222
r_angle_refined_deg1.086
r_nbtor_refined0.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.468
r_dihedral_angle_4_deg17.903
r_dihedral_angle_3_deg14.123
r_dihedral_angle_1_deg5.881
r_scangle_it4.102
r_scbond_it2.939
r_mcangle_it1.853
r_mcbond_it1.222
r_angle_refined_deg1.086
r_nbtor_refined0.29
r_nbd_refined0.186
r_symmetry_vdw_refined0.169
r_xyhbond_nbd_refined0.11
r_symmetry_hbond_refined0.104
r_chiral_restr0.068
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4636
Nucleic Acid Atoms
Solvent Atoms261
Heterogen Atoms62

Software

Software
Software NamePurpose
CrystalCleardata collection
CNSrefinement
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling
CNSphasing