X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.529880% saturated lithium sulfate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.1943.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.689α = 90
b = 26.999β = 103.69
c = 55.523γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDmirrors2006-07-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97946SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.453.94699.80.0745.85.5255622556221.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.481000.4161.75.43680

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTLambda Cro Q27P/A29S/K32Q at 1.35 A resolution in space group P32211.453.922556125561130099.820.1410.1390.175RANDOM12.014
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.07-0.4-0.92-0.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.209
r_dihedral_angle_4_deg15.655
r_sphericity_free15.115
r_dihedral_angle_1_deg14.073
r_dihedral_angle_3_deg12.578
r_sphericity_bonded8.97
r_scangle_it8.753
r_scbond_it7.281
r_mcangle_it4.362
r_mcbond_it3.862
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.209
r_dihedral_angle_4_deg15.655
r_sphericity_free15.115
r_dihedral_angle_1_deg14.073
r_dihedral_angle_3_deg12.578
r_sphericity_bonded8.97
r_scangle_it8.753
r_scbond_it7.281
r_mcangle_it4.362
r_mcbond_it3.862
r_rigid_bond_restr3.634
r_mcbond_other2.072
r_angle_refined_deg1.505
r_angle_other_deg0.951
r_metal_ion_refined0.333
r_symmetry_vdw_other0.3
r_nbd_refined0.229
r_symmetry_vdw_refined0.227
r_nbd_other0.194
r_nbtor_refined0.184
r_symmetry_hbond_refined0.182
r_xyhbond_nbd_refined0.139
r_chiral_restr0.102
r_nbtor_other0.084
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms942
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms39

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
CrystalCleardata reduction