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Crystal structure of HpcG complexed with oxalate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 7% PEG 12000, 0.1M MES, 0.7M potassium thiocyanate, 7% PEG 550 MME, 10mM DTT, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.01 59.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.541 α = 90 b = 136.541 β = 90 c = 192.397 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2006-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.00 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 95 0.069 10.4 6.4 188655
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 65.8 0.504 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 10 188655 178071 9449 95.05 0.19393 0.19223 0.22602 RANDOM 24.755
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.309 r_dihedral_angle_4_deg 18.072 r_dihedral_angle_3_deg 13.682 r_dihedral_angle_1_deg 5.818 r_scangle_it 3.658 r_scbond_it 2.216 r_mcangle_it 1.423 r_angle_refined_deg 1.359 r_mcbond_it 0.774 r_symmetry_vdw_refined 0.374
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.309 r_dihedral_angle_4_deg 18.072 r_dihedral_angle_3_deg 13.682 r_dihedral_angle_1_deg 5.818 r_scangle_it 3.658 r_scbond_it 2.216 r_mcangle_it 1.423 r_angle_refined_deg 1.359 r_mcbond_it 0.774 r_symmetry_vdw_refined 0.374 r_nbtor_refined 0.307 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_metal_ion_refined 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10170 Nucleic Acid Atoms Solvent Atoms 755 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing