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Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, ATP and UTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNE PDB entry 1WNE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 30% PEG 4000, 0.2M magnesium acetate, 0.1M sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.17 43.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.11 α = 90 b = 94.11 β = 90 c = 99.362 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 4 2004-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 0.8 0.56 10.4 10973 10043 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1WNE 3 30 2 2 10973 10043 504 99.99 0.23913 0.22724 0.3504 0.28993 RANDOM 62.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.37 0.69 1.37 -2.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.337 r_dihedral_angle_4_deg 18.041 r_dihedral_angle_3_deg 14.927 r_dihedral_angle_1_deg 5.387 r_scangle_it 2.109 r_angle_refined_deg 1.406 r_scbond_it 1.232 r_mcangle_it 1.2 r_mcbond_it 0.655 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.337 r_dihedral_angle_4_deg 18.041 r_dihedral_angle_3_deg 14.927 r_dihedral_angle_1_deg 5.387 r_scangle_it 2.109 r_angle_refined_deg 1.406 r_scbond_it 1.232 r_mcangle_it 1.2 r_mcbond_it 0.655 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.303 r_nbd_refined 0.257 r_xyhbond_nbd_refined 0.207 r_symmetry_hbond_refined 0.182 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3731 Nucleic Acid Atoms 336 Solvent Atoms 20 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement ProDC data collection DENZO data reduction SCALEPACK data scaling CNS phasing