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Acetylene Hydratase from Pelobacter acetylenicus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 21% PEG 8000, 0.3M MgAcetate, 0.1M NaCacodylate, 0.04M NaAzide, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.776 α = 90 b = 71.971 β = 124.26 c = 106.76 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-08-02 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.738 MPG/DESY, HAMBURG BW6 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 1.05 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.26 50 95.5 0.036 19.6 1.85 203457 194301 2 2 18.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.26 1.35 92.5 0.333 1.91 1.65 35051
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.26 30.63 184521 9771 95.53 0.16132 0.15953 0.1575 0.19512 0.1924 RANDOM 14.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.18 1.2 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.061 r_dihedral_angle_4_deg 20.072 r_dihedral_angle_3_deg 12.631 r_dihedral_angle_1_deg 6.011 r_scangle_it 3.796 r_scbond_it 2.662 r_mcangle_it 1.663 r_angle_refined_deg 1.412 r_mcbond_it 1.091 r_symmetry_metal_ion_refined 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.061 r_dihedral_angle_4_deg 20.072 r_dihedral_angle_3_deg 12.631 r_dihedral_angle_1_deg 6.011 r_scangle_it 3.796 r_scbond_it 2.662 r_mcangle_it 1.663 r_angle_refined_deg 1.412 r_mcbond_it 1.091 r_symmetry_metal_ion_refined 0.39 r_nbtor_refined 0.312 r_metal_ion_refined 0.307 r_symmetry_vdw_refined 0.252 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.184 r_symmetry_hbond_refined 0.179 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7633 Nucleic Acid Atoms Solvent Atoms 928 Heterogen Atoms 155
Software Software Software Name Purpose REFMAC refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling SHELXD phasing