2DWF
NMR structure of Mini-B, an N-terminal- C-terminal construct from human Surfactant Protein B (SP-B), in Sodium dodecyl sulfate (SDS) micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | Partially 15N-labelled peptide with 15N labels on Leucine (3, 7, 22, 25, 29, 31), Alanine (6, 13) and Glycine (18); 1.5mM peptide | 150mM SDS, 0.4mM DSS, 90% H2O, 10% D2O | 0 | 5 | ambient | 318 | |
2 | 2D TOCSY | Partially 15N-labelled peptide with 15N labels on Leucine (3, 7, 22, 25, 29, 31), Alanine (6, 13) and Glycine (18); 1.5mM peptide | 150mM SDS, 0.4mM DSS, 90% H2O, 10% D2O | 0 | 5 | ambient | 318 | |
3 | 3D_15N-separated_NOESY | Partially 15N-labelled peptide with 15N labels on Leucine (3, 7, 22, 25, 29, 31), Alanine (6, 13) and Glycine (18); 1.5mM peptide | 150mM SDS, 0.4mM DSS, 90% H2O, 10% D2O | 0 | 5 | ambient | 318 | |
4 | 3D_15N-separated_TOCSY | Partially 15N-labelled peptide with 15N labels on Leucine (3, 7, 22, 25, 29, 31), Alanine (6, 13) and Glycine (18); 1.5mM peptide | 150mM SDS, 0.4mM DSS, 90% H2O, 10% D2O | 0 | 5 | ambient | 318 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
Simulated annealing, Molecular dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.2 | Delaglio |
2 | data analysis | Sparky | 3.110 | Goddard and Kneller |
3 | refinement | CNS | 1.1 | Brunger |
4 | data analysis | MOLMOL | 2K.2 | Koradi |