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Acanthamoeba myosin I SH3 domain bound to Acan125
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SEM PDB entry 1SEM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 278 pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 1.74 29.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.701 α = 90 b = 37.362 β = 90 c = 43.836 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2002-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.86 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 30 10624
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1SEM 1.42 28.4 10584 508 99.84 0.159 0.159 0.1613 0.173 0.1768 RANDOM 9.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 -0.37 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.903 r_scangle_it 2.467 r_scbond_it 1.825 r_angle_refined_deg 1.142 r_mcangle_it 0.997 r_angle_other_deg 0.776 r_mcbond_it 0.538 r_symmetry_vdw_other 0.301 r_nbd_other 0.246 r_nbd_refined 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.903 r_scangle_it 2.467 r_scbond_it 1.825 r_angle_refined_deg 1.142 r_mcangle_it 0.997 r_angle_other_deg 0.776 r_mcbond_it 0.538 r_symmetry_vdw_other 0.301 r_nbd_other 0.246 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.159 r_xyhbond_nbd_refined 0.108 r_symmetry_hbond_refined 0.103 r_nbtor_other 0.081 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 544 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SCALEPACK data scaling AMoRE phasing