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Crystal structure of the FtsH protease domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 0.1M MES (pH 6.0), 5% PEG8K, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 48.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.8 α = 90 b = 116.8 β = 90 c = 63.5 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-07-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.00000, 1.05000, 1.00524, 1.00714 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 100 99.3 42.9 12436 12436
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.79 2.89 93.3 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.79 20 11487 11487 876 99.56 0.2544 0.2544 0.25092 0.2504 0.29903 0.2974 RANDOM 49.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.51 -2.25 -4.51 6.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.485 r_dihedral_angle_4_deg 24.2 r_dihedral_angle_3_deg 19.14 r_dihedral_angle_1_deg 5.107 r_scangle_it 2.94 r_scbond_it 2.025 r_angle_refined_deg 1.36 r_mcangle_it 1.15 r_mcbond_it 0.742 r_symmetry_hbond_refined 0.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.485 r_dihedral_angle_4_deg 24.2 r_dihedral_angle_3_deg 19.14 r_dihedral_angle_1_deg 5.107 r_scangle_it 2.94 r_scbond_it 2.025 r_angle_refined_deg 1.36 r_mcangle_it 1.15 r_mcbond_it 0.742 r_symmetry_hbond_refined 0.349 r_nbtor_refined 0.311 r_metal_ion_refined 0.299 r_nbd_refined 0.246 r_symmetry_vdw_refined 0.221 r_xyhbond_nbd_refined 0.111 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2628 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing