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Crystal Structure of Z3393 from Escherichia coli O157:H7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.9 297 0.1M bisTris, 24% PEG 3350, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 1.9 36.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.134 α = 114.08 b = 76.075 β = 94.93 c = 85.464 γ = 108.11
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.979 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 34.5 98 0.073 0.063 32 2.5 44440 43818 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 98 0.234 8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.41 34.5 41627 39527 2100 100 0.17725 0.1734 0.188 0.24936 0.1801 RANDOM 27.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.57 1.49 -0.33 0.53 1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.94 r_scangle_it 7.029 r_scbond_it 4.981 r_mcangle_it 3.256 r_angle_refined_deg 3.062 r_mcbond_it 1.957 r_angle_other_deg 1.46 r_symmetry_vdw_other 0.469 r_symmetry_vdw_refined 0.461 r_symmetry_hbond_refined 0.379
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.94 r_scangle_it 7.029 r_scbond_it 4.981 r_mcangle_it 3.256 r_angle_refined_deg 3.062 r_mcbond_it 1.957 r_angle_other_deg 1.46 r_symmetry_vdw_other 0.469 r_symmetry_vdw_refined 0.461 r_symmetry_hbond_refined 0.379 r_nbd_refined 0.378 r_nbd_other 0.297 r_xyhbond_nbd_refined 0.249 r_chiral_restr 0.224 r_nbtor_other 0.119 r_bond_refined_d 0.05 r_gen_planes_refined 0.018 r_gen_planes_other 0.014 r_bond_other_d 0.009 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9059 Nucleic Acid Atoms Solvent Atoms 516 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHENIX phasing SOLVE phasing