X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP9277PEG3350, Lithium Chloride, Calcium Chloride, CAPSO, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
238.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.55α = 90
b = 38.53β = 90.69
c = 89.95γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-02-20MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-5A1.34045, 1.34095, 1.32312, 1.37000Photon FactoryBL-5A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25098.90.0610.06115.33.6199361970834.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2897.30.2210.2216.33.61920

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.2501970819499100498.670.218550.218550.215820.26753RANDOM32.393
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.570.172.06-2.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.172
r_dihedral_angle_4_deg17.592
r_dihedral_angle_3_deg16.651
r_dihedral_angle_1_deg5.622
r_scangle_it3.158
r_scbond_it1.969
r_mcangle_it1.417
r_angle_refined_deg1.369
r_mcbond_it0.858
r_angle_other_deg0.835
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.172
r_dihedral_angle_4_deg17.592
r_dihedral_angle_3_deg16.651
r_dihedral_angle_1_deg5.622
r_scangle_it3.158
r_scbond_it1.969
r_mcangle_it1.417
r_angle_refined_deg1.369
r_mcbond_it0.858
r_angle_other_deg0.835
r_symmetry_hbond_refined0.244
r_nbd_refined0.223
r_symmetry_vdw_other0.223
r_nbd_other0.179
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.178
r_mcbond_other0.158
r_metal_ion_refined0.122
r_symmetry_vdw_refined0.11
r_nbtor_other0.087
r_chiral_restr0.08
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3106
Nucleic Acid Atoms
Solvent Atoms153
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SHARPphasing