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Trypanosoma brucei UDP-galactose-4-epimerase in ternary complex with NAD and the substrate analogue UDP-4-deoxy-4-fluoro-alpha-D-galactose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 8% PEG 8000, 200MM KCL, 50MM NA2B4O7, 5% GLYCEROL, PH 8.5
Crystal Properties Matthews coefficient Solvent content 3 58.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.724 α = 90 b = 111.694 β = 90 c = 160.873 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2005-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 92 96.8 0.09 15.2 4.5 49501 2 64.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 78.9 0.47 2.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.7 91.67 48640 2454 95.3 0.203 0.199 0.2028 0.281 0.2808 RANDOM 48.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.481 0.428 -3.909
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.012 r_dihedral_angle_3_deg 17.99 r_dihedral_angle_4_deg 17.617 r_dihedral_angle_1_deg 6.206 r_scangle_it 2.266 r_angle_refined_deg 1.464 r_scbond_it 1.439 r_mcangle_it 1.135 r_mcbond_it 0.624 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.012 r_dihedral_angle_3_deg 17.99 r_dihedral_angle_4_deg 17.617 r_dihedral_angle_1_deg 6.206 r_scangle_it 2.266 r_angle_refined_deg 1.464 r_scbond_it 1.439 r_mcangle_it 1.135 r_mcbond_it 0.624 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11348 Nucleic Acid Atoms Solvent Atoms 416 Heterogen Atoms 320
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling