☰ Navigation Tabs
Crystal Structure of the MYB domain of the RAD transcription factor from Antirrhinum majus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.5 pH 9.50
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.594 α = 90 b = 44.594 β = 90 c = 71.89 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2004-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 37.9 98.6 0.07 33.3 10.8 6112 3 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.3 0.56 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.9 37.9 5727 278 97.5 0.216 0.215 0.2195 0.25 0.266 RANDOM 24.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.25 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.087 r_dihedral_angle_3_deg 16.939 r_dihedral_angle_4_deg 7.321 r_dihedral_angle_1_deg 5.758 r_scangle_it 3.213 r_scbond_it 2.368 r_angle_refined_deg 1.934 r_mcangle_it 1.38 r_angle_other_deg 1.107 r_mcbond_it 0.991
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.087 r_dihedral_angle_3_deg 16.939 r_dihedral_angle_4_deg 7.321 r_dihedral_angle_1_deg 5.758 r_scangle_it 3.213 r_scbond_it 2.368 r_angle_refined_deg 1.934 r_mcangle_it 1.38 r_angle_other_deg 1.107 r_mcbond_it 0.991 r_symmetry_vdw_other 0.241 r_xyhbond_nbd_refined 0.222 r_nbd_refined 0.217 r_nbtor_refined 0.195 r_nbd_other 0.188 r_chiral_restr 0.132 r_symmetry_vdw_refined 0.132 r_nbtor_other 0.088 r_symmetry_hbond_refined 0.05 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 512 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXCD phasing SHELXD phasing SHELXE phasing