X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
13.6CRYSTALS WERE SOAKED IN 300 MM ACETIC ACID, 50 MM KBR, 22 % PEG3000, 0.1 M CITRATE PH 3.6 FOR 10 MIN AT ROOM TEMPERATURE
Crystal Properties
Matthews coefficientSolvent content
2.652

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.46α = 90
b = 150.82β = 90
c = 100.39γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32094.70.099.93.8104573217.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3376.90.332.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1CPO1.319.789934252311000.1490.1480.17RANDOM12.14
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.36-0.960.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.676
r_dihedral_angle_4_deg13.22
r_dihedral_angle_3_deg11.235
r_dihedral_angle_1_deg5.987
r_scangle_it3.036
r_scbond_it2.241
r_angle_refined_deg1.495
r_mcangle_it1.475
r_mcbond_it1.202
r_rigid_bond_restr1.096
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.676
r_dihedral_angle_4_deg13.22
r_dihedral_angle_3_deg11.235
r_dihedral_angle_1_deg5.987
r_scangle_it3.036
r_scbond_it2.241
r_angle_refined_deg1.495
r_mcangle_it1.475
r_mcbond_it1.202
r_rigid_bond_restr1.096
r_angle_other_deg0.842
r_mcbond_other0.497
r_nbd_refined0.235
r_symmetry_vdw_refined0.216
r_nbtor_refined0.185
r_nbd_other0.182
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.168
r_symmetry_vdw_other0.162
r_nbtor_other0.086
r_chiral_restr0.08
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2316
Nucleic Acid Atoms
Solvent Atoms579
Heterogen Atoms265

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
AMoREphasing