2CHH

RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.25UL DROPS OF 10MG/ML PROTEIN DISSOLVED IN WATER MIXED WITH 5UL DROPS OF 8% PEG 10000, 0.1M TRIS HCL, PH 8.2 WITH MANNOSE AT 270UG/ML
Crystal Properties
Matthews coefficientSolvent content
2.748

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.292α = 90
b = 62.064β = 90
c = 74.893γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDTOROIDAL MIRROR2003-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1118.6990.0614.682.92737385.58
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
111.0197.30.392.652.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1UQX118.4769370368598.80.10.10.11RANDOM7.69
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.070.46-0.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.138
r_dihedral_angle_3_deg12.734
r_dihedral_angle_1_deg6.96
r_scangle_it4.125
r_scbond_it3.166
r_mcangle_it2.306
r_angle_refined_deg1.977
r_angle_other_deg1.919
r_mcbond_it1.602
r_chiral_restr0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.138
r_dihedral_angle_3_deg12.734
r_dihedral_angle_1_deg6.96
r_scangle_it4.125
r_scbond_it3.166
r_mcangle_it2.306
r_angle_refined_deg1.977
r_angle_other_deg1.919
r_mcbond_it1.602
r_chiral_restr0.37
r_symmetry_vdw_refined0.336
r_nbd_refined0.282
r_symmetry_vdw_other0.269
r_xyhbond_nbd_refined0.215
r_nbd_other0.191
r_symmetry_hbond_refined0.171
r_nbtor_refined0.169
r_nbtor_other0.091
r_bond_refined_d0.022
r_gen_planes_refined0.009
r_bond_other_d0.006
r_gen_planes_other0.003
r_dihedral_angle_4_deg
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms817
Nucleic Acid Atoms
Solvent Atoms220
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing