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AGAO in complex with wc11b (Ru-wire inhibitor, 11-carbon linker, data set b)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 THE CRYSTAL WAS GROWN BY HANGING DROP OVER 150 MM CITRATE PH 7.5, 1100 MM NH4SO4, 0.26 MM CUSO4. THE INHIBITOR WAS ADDED BY SOAKING OVER TWO DAYS. 1 MICROLITRE OF 17.2 MM WIRE-INHIBITOR WAS ADDED TO 0.2 ML RESERVOIR. GLYCEROL WAS THEN, ADDED IN 2-3% INCREMENTS, TO THE RESERVOIR, WITH THE NEW RESERVOIR SOLUTION SUBSTITUTING THE DROP SOLUTION. THE FINAL GLYCEROL CONCENTRATION WAS 30%.
Crystal Properties Matthews coefficient Solvent content 2.96 58.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.919 α = 90 b = 63.042 β = 112.19 c = 92.067 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2003-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 15 96 0.03 23.88 3.59 340146 -3 20.44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.72 81.5 0.16 5.08 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.67 14.99 89939 4738 97.3 0.161 0.16 0.1902 0.179 0.2049 RANDOM 22.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.39 0.11 2.62 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.161 r_scangle_it 5.042 r_scbond_it 3.342 r_mcangle_it 2.342 r_mcbond_it 1.437 r_angle_refined_deg 1.387 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.305 r_nbd_other 0.249 r_nbd_refined 0.192
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.161 r_scangle_it 5.042 r_scbond_it 3.342 r_mcangle_it 2.342 r_mcbond_it 1.437 r_angle_refined_deg 1.387 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.305 r_nbd_other 0.249 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.137 r_xyhbond_nbd_refined 0.112 r_nbtor_other 0.081 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4868 Nucleic Acid Atoms Solvent Atoms 459 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling