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Structure of B.subtilis LrpC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other LRPA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.6 pH 8.60
Crystal Properties Matthews coefficient Solvent content 4.1 70.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.834 α = 90 b = 166.151 β = 90 c = 155.768 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 99.4 0.09 9.6 83371
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.8 0.49 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT LRPA 2.4 119.52 79206 4163 99.3 0.217 0.215 0.2128 0.266 0.2648 RANDOM 43.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -0.64 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.446 r_dihedral_angle_3_deg 19.148 r_dihedral_angle_4_deg 16.77 r_dihedral_angle_1_deg 8.141 r_scangle_it 5.489 r_scbond_it 3.589 r_angle_refined_deg 2.325 r_mcangle_it 2.223 r_mcbond_it 1.334 r_symmetry_hbond_refined 0.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.446 r_dihedral_angle_3_deg 19.148 r_dihedral_angle_4_deg 16.77 r_dihedral_angle_1_deg 8.141 r_scangle_it 5.489 r_scbond_it 3.589 r_angle_refined_deg 2.325 r_mcangle_it 2.223 r_mcbond_it 1.334 r_symmetry_hbond_refined 0.368 r_nbtor_refined 0.313 r_nbd_refined 0.252 r_xyhbond_nbd_refined 0.188 r_symmetry_vdw_refined 0.171 r_chiral_restr 0.168 r_bond_refined_d 0.027 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8708 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing