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AGAO in complex with wc6b (Ru-wire inhibitor, 6-carbon linker, data set b)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 THE CRYSTAL WAS GROWN BY HANGING DROP OVER 150 MM CITRATE PH 7.0, 700 MM NH4SO4. THE INHIBITOR WAS ADDED BY SOAKING, OVER SIX DAYS. 20 MG OF THE INHIBITOR (WC6) DISSOLVED IN 200 MICROLITRE ETHANOL. 1MICROLITRE OF THIS WAS ADDED TO THE 200MICROLITRE RESERVOIR. GLYCEROL WAS THEN, ADDED IN 2-3% INCREMENTS, TO THE RESERVOIR, WITH THE NEW RESERVOIR SOLUTION SUBSTITUTING THE DROP SOLUTION. THE FINAL GLYCEROL CONCENTRATION WAS 30%.
Crystal Properties Matthews coefficient Solvent content 3.07 59.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.98 α = 90 b = 63.097 β = 112.22 c = 92.024 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2004-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 15 95 0.04 24.64 6.37 474513 -3 26.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.85 78.7 0.19 3.44 2.93
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 14.99 70735 3727 95.8 0.157 0.156 0.1895 0.178 0.2098 RANDOM 29.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.93 0.28 3.9 -1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.423 r_scangle_it 6.224 r_scbond_it 4.329 r_mcangle_it 3.168 r_mcbond_it 2.073 r_angle_refined_deg 1.487 r_angle_other_deg 0.805 r_symmetry_vdw_other 0.291 r_nbd_other 0.248 r_symmetry_hbond_refined 0.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.423 r_scangle_it 6.224 r_scbond_it 4.329 r_mcangle_it 3.168 r_mcbond_it 2.073 r_angle_refined_deg 1.487 r_angle_other_deg 0.805 r_symmetry_vdw_other 0.291 r_nbd_other 0.248 r_symmetry_hbond_refined 0.198 r_nbd_refined 0.193 r_symmetry_vdw_refined 0.136 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.086 r_nbtor_other 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4868 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling