Phosphorylation of the Cytoplasmic Tail of Tissue Factor and its Role in Modulating Structure and Binding Affinity
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | ROESY | 90% WATER 10% D2O | 0 | 6.0 | 1.0 atm | 285.0 | ||
| 2 | NOESY | 90% WATER 10% D2O | 0 | 6.0 | 1.0 atm | 285.0 | ||
| 3 | TOCSY | 90% WATER 10% D2O | ||||||
| 4 | IP-COSY | 90% WATER 10% D2O | ||||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | OTHER | 800 |
| 2 | Bruker | OTHER | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DYANA AMBER 8.0. | INITIAL NMR STRUCTURES WERE CALCULATED BY DYANA, WHICH INCLUDES MODIFIED SEP RESIDUE, PHOSPHORYLATED SER, CRAFT AND LEGGE, 2005, J.BIOL MOL.NMR. TOP10 ANNEALLED STRUCTURES THEN FURTHER MINIMIZED VIA AMBER 8.0. | DYANA AMBER |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOWEST POTENTIAL ENERGY ENSEMBLES |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 10 |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE UNPHOSPHORYLATED TFCD PEPTIDE NMR STRUCTURES WERE CALCULATED USING 2D HOMONUCLEAR NMR SPECTROSCOPY METHODS. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | DYANA AMBER | 8.0 | PONDER,J.W. |
| 2 | structure solution | NMRPipe | ||
| 3 | structure solution | NMRView | ||
| 4 | structure solution | DYANA | ||
| 5 | structure solution | Amber | 8.0 | |
| 6 | structure solution | MOLMOL | ||
