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Human Rabex-5 residues 1-74 in complex with Ubiquitin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 SITTING DROP 300NL PLUS 300NL 0.2M AMMONIUM ACETATE 0.1M NACITRATE PH 6.5 25% PEG400
Crystal Properties Matthews coefficient Solvent content 3.08 59.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.3 α = 108.2 b = 68.9 β = 102.7 c = 98.5 γ = 90.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-09-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 92.3 0.03 12.7 2.7 57954 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 66.4 0.17 3.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 20 53884 2876 90.5 0.198 0.195 0.1946 0.238 0.1996 RANDOM 44.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 -0.43 0.02 0.23 -0.1 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.686 r_dihedral_angle_4_deg 20.611 r_dihedral_angle_3_deg 18.43 r_dihedral_angle_1_deg 6.077 r_scangle_it 4.268 r_scbond_it 2.858 r_angle_refined_deg 1.768 r_mcangle_it 1.517 r_mcbond_it 0.994 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.686 r_dihedral_angle_4_deg 20.611 r_dihedral_angle_3_deg 18.43 r_dihedral_angle_1_deg 6.077 r_scangle_it 4.268 r_scbond_it 2.858 r_angle_refined_deg 1.768 r_mcangle_it 1.517 r_mcbond_it 0.994 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.244 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.136 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6178 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling HKL2Map phasing