2C61

Crystal structure of the non-catalytic B subunit of A-type ATPase from M. mazei Go1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.515% PEG 400 0.1 M NACL 0.1 M CITRATE PH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.244

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.623α = 90
b = 96.418β = 90
c = 130.715γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2005-07-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.534.3299.80.086.241403611
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.58990.531.43.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.534.3214036174031000.1870.1860.211RANDOM17.07
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.43-0.44-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.32
r_dihedral_angle_4_deg13.705
r_dihedral_angle_3_deg11.961
r_dihedral_angle_1_deg10.027
r_scangle_it3.227
r_scbond_it2.041
r_angle_refined_deg1.296
r_mcangle_it1.231
r_mcbond_it0.746
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.32
r_dihedral_angle_4_deg13.705
r_dihedral_angle_3_deg11.961
r_dihedral_angle_1_deg10.027
r_scangle_it3.227
r_scbond_it2.041
r_angle_refined_deg1.296
r_mcangle_it1.231
r_mcbond_it0.746
r_nbtor_refined0.306
r_nbd_refined0.196
r_symmetry_vdw_refined0.16
r_symmetry_hbond_refined0.139
r_xyhbond_nbd_refined0.133
r_chiral_restr0.093
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6606
Nucleic Acid Atoms
Solvent Atoms748
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SOLVEphasing