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CRYSTAL STRUCTURE OF OXALYL-COA DECARBOXYLASE IN COMPLEX WITH THE COFACTOR DERIVATIVE THIAMIN-2-THIAZOLONE DIPHOSPHATE AND ADENOSINE DIPHOSPHATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JSC PDB ENTRY 1JSC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 27V/V % PEG 550MME, 100MM BIS-TRIS PH 6.5, 50MM CACL2
Crystal Properties Matthews coefficient Solvent content 2.8 53.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.3 α = 90 b = 124.3 β = 90 c = 151.7 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SILICON TOROIDAL MIRROR COATED WITH RHODIUM 2004-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 29.24 99.8 0.1 17.9 7.1 140751 2 21.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.82 100 0.49 3.8 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1JSC 1.73 29.2 272696 12699 99.6 0.1505 0.1505 0.1479 0.1749 0.1709 RANDOM BUT WITH TWIN RELATED REFLECTIONS IN SAME SET 25.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.81 2.18 2.81 -5.63
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.73 c_scangle_it 2.79 c_scbond_it 1.875 c_mcangle_it 1.673 c_angle_deg 1.29298 c_mcbond_it 1.052 c_improper_angle_d 0.9397 c_bond_d 0.006619 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.73 c_scangle_it 2.79 c_scbond_it 1.875 c_mcangle_it 1.673 c_angle_deg 1.29298 c_mcbond_it 1.052 c_improper_angle_d 0.9397 c_bond_d 0.006619 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8157 Nucleic Acid Atoms Solvent Atoms 658 Heterogen Atoms 110
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling MOLREP phasing