2C0L

TPR DOMAIN OF HUMAN PEX5P IN COMPLEX WITH HUMAN MSCP2


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.0639.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.48α = 90
b = 68.62β = 90
c = 137.39γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X13EMBL/DESY, HAMBURGX13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32599.80.0914.1617692-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.41000.53.86.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.320176818841000.2050.2020.256RANDOM33.67
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.83-1.04-1.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.381
r_dihedral_angle_4_deg19.332
r_dihedral_angle_3_deg15.619
r_dihedral_angle_1_deg3.655
r_scangle_it3.639
r_scbond_it2.615
r_mcangle_it2.555
r_mcbond_it2.224
r_angle_refined_deg0.969
r_angle_other_deg0.705
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.381
r_dihedral_angle_4_deg19.332
r_dihedral_angle_3_deg15.619
r_dihedral_angle_1_deg3.655
r_scangle_it3.639
r_scbond_it2.615
r_mcangle_it2.555
r_mcbond_it2.224
r_angle_refined_deg0.969
r_angle_other_deg0.705
r_nbd_other0.227
r_symmetry_vdw_other0.21
r_nbd_refined0.201
r_symmetry_vdw_refined0.14
r_symmetry_hbond_refined0.133
r_xyhbond_nbd_refined0.129
r_nbtor_other0.085
r_chiral_restr0.054
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3202
Nucleic Acid Atoms
Solvent Atoms99
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing