2BZ6

Orally available Factor7a inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.535%AS, 2%PEG400, 100MM BICINE PH8.5, 15% GLYCEROL, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
3.1260.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 94.93α = 90
b = 94.93β = 90
c = 115.64γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH MAR3002000-02-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM1AESRFBM1A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.52081.60.1210.15769242-322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.636.50.811.785.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.673.3258180304590.20.1680.1660.193RANDOM18.77
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.51-0.511.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.692
r_dihedral_angle_4_deg17.793
r_dihedral_angle_3_deg12.051
r_dihedral_angle_1_deg6.355
r_scangle_it2.266
r_scbond_it1.66
r_angle_refined_deg1.462
r_mcangle_it1.062
r_mcbond_it0.904
r_angle_other_deg0.809
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.692
r_dihedral_angle_4_deg17.793
r_dihedral_angle_3_deg12.051
r_dihedral_angle_1_deg6.355
r_scangle_it2.266
r_scbond_it1.66
r_angle_refined_deg1.462
r_mcangle_it1.062
r_mcbond_it0.904
r_angle_other_deg0.809
r_nbd_refined0.218
r_nbd_other0.193
r_symmetry_vdw_other0.191
r_xyhbond_nbd_refined0.187
r_nbtor_refined0.174
r_symmetry_hbond_refined0.16
r_chiral_restr0.083
r_nbtor_other0.081
r_symmetry_vdw_refined0.076
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2370
Nucleic Acid Atoms
Solvent Atoms500
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling