2BY1

Is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP20% PEG 2000 MME, 0.1 M TRIS-HCL PH 8.5, 5% GLYCEROL, 0.1 M MGCL2
Crystal Properties
Matthews coefficientSolvent content
1.8633.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.608α = 90
b = 66.742β = 90
c = 153.538γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.553099.90.09111.43.98965413.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6399.90.621.73.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.552085727360499.70.1590.1580.191RANDOM15.43
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5-0.620.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.607
r_dihedral_angle_4_deg17.018
r_dihedral_angle_3_deg12.074
r_dihedral_angle_1_deg5.819
r_scangle_it3.552
r_scbond_it2.492
r_angle_refined_deg1.739
r_mcangle_it1.738
r_mcbond_it1.155
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.607
r_dihedral_angle_4_deg17.018
r_dihedral_angle_3_deg12.074
r_dihedral_angle_1_deg5.819
r_scangle_it3.552
r_scbond_it2.492
r_angle_refined_deg1.739
r_mcangle_it1.738
r_mcbond_it1.155
r_nbtor_refined0.312
r_nbd_refined0.221
r_xyhbond_nbd_refined0.182
r_symmetry_vdw_refined0.179
r_symmetry_hbond_refined0.17
r_chiral_restr0.133
r_bond_refined_d0.02
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4601
Nucleic Acid Atoms
Solvent Atoms933
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling