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MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH NON-CANONICAL INTERNALIZATION PEPTIDE VEDYEQGLSG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BXX PDB ENTRY 1BXX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.1 289 2.2M NACL, 0.4M NA/K PHOSPHATE PH 7.1, 10MM DTT, 0.1M MES, 15% GLYCEROL, 16 DEGREES
Crystal Properties Matthews coefficient Solvent content 2.8 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.997 α = 90 b = 124.997 β = 90 c = 74.661 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 23.6 99.8 0.07 36 17.5 16497
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 100 0.75 3.7 15.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BXX 2.8 105.41 15655 825 99.8 0.195 0.192 0.2012 0.251 0.2598 RANDOM 72.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.19 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.975 r_dihedral_angle_3_deg 19.919 r_dihedral_angle_4_deg 19.016 r_dihedral_angle_1_deg 8.851 r_scangle_it 3.794 r_scbond_it 2.485 r_angle_refined_deg 1.978 r_mcangle_it 1.848 r_mcbond_it 1.538 r_angle_other_deg 0.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.975 r_dihedral_angle_3_deg 19.919 r_dihedral_angle_4_deg 19.016 r_dihedral_angle_1_deg 8.851 r_scangle_it 3.794 r_scbond_it 2.485 r_angle_refined_deg 1.978 r_mcangle_it 1.848 r_mcbond_it 1.538 r_angle_other_deg 0.903 r_symmetry_vdw_other 0.245 r_nbd_other 0.206 r_symmetry_hbond_refined 0.206 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.19 r_symmetry_vdw_refined 0.136 r_chiral_restr 0.102 r_nbtor_other 0.096 r_bond_refined_d 0.022 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2101 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling