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EGF Domains 1,2,5 of human EMR2, a 7-TM immune system molecule, in complex with barium.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1-0.175 M BARIUM CHLORIDE, 12-16% W/V PEG 8000, 0.1 M NA CACODYLATE BUFFER PH 6.5
Crystal Properties Matthews coefficient Solvent content 3.2 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.06 α = 90 b = 61.56 β = 90 c = 35.47 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 23.26 90.3 0.08 4.9 22.2 14758 -3.005
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 57.9 0.53 1.1 17.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.9 51.299 14734 14734 732 0.2384 0.2384 0.2376 0.2392 0.2547 0.2697 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 18.688 t_it 1.336 t_angle_deg 0.951 t_nbd 0.083 t_gen_planes 0.021 t_trig_c_planes 0.008 t_bond_d 0.006 t_incorr_chiral_ct t_pseud_angle t_omega_torsion
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 18.688 t_it 1.336 t_angle_deg 0.951 t_nbd 0.083 t_gen_planes 0.021 t_trig_c_planes 0.008 t_bond_d 0.006 t_incorr_chiral_ct t_pseud_angle t_omega_torsion t_other_torsion t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1032 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms 9
Software Software Software Name Purpose TNT refinement MOSFLM data reduction SCALA data scaling SHARP phasing DM phasing SOLOMON phasing