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The structure of Hydroxypropylphosphonic acid epoxidase from S. wedmorenis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.1 M AMMONIUM SULPHATE, 100 MM TRIS-HCL PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.43 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.43 α = 90 b = 86.43 β = 90 c = 221.853 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2004-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.9 0.1 26.6 12.2 39606 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.7 0.61 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 30 37550 1984 100 0.184 0.181 0.242 RANDOM 31.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.03 -0.06 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.089 r_dihedral_angle_3_deg 14.464 r_dihedral_angle_4_deg 14.114 r_scangle_it 7.467 r_dihedral_angle_1_deg 6.381 r_scbond_it 6.056 r_mcangle_it 3.097 r_mcbond_it 1.445 r_angle_refined_deg 1.44 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.089 r_dihedral_angle_3_deg 14.464 r_dihedral_angle_4_deg 14.114 r_scangle_it 7.467 r_dihedral_angle_1_deg 6.381 r_scbond_it 6.056 r_mcangle_it 3.097 r_mcbond_it 1.445 r_angle_refined_deg 1.44 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.213 r_xyhbond_nbd_refined 0.21 r_chiral_restr 0.1 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2921 Nucleic Acid Atoms Solvent Atoms 460 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing