2BJB

Mycobacterium Tuberculosis Epsp Synthase In Unliganded State


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.11.6M NA ACETATE, pH 6.10
Crystal Properties
Matthews coefficientSolvent content
2.1441.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.864α = 90
b = 102.864β = 90
c = 99.512γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHAU-COATED PLANAR, TOROIDAL MIRRORS2003-11-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW6MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8151000.1117.55.93638017.73
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.821000.812.95.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1G6T1.8153452618131000.1640.1620.205RANDOM21.21
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.160.080.16-0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.735
r_dihedral_angle_1_deg4.345
r_scbond_it4.283
r_mcangle_it3.608
r_mcbond_it2.108
r_angle_refined_deg1.888
r_angle_other_deg0.986
r_symmetry_vdw_other0.326
r_nbd_other0.249
r_symmetry_hbond_refined0.246
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.735
r_dihedral_angle_1_deg4.345
r_scbond_it4.283
r_mcangle_it3.608
r_mcbond_it2.108
r_angle_refined_deg1.888
r_angle_other_deg0.986
r_symmetry_vdw_other0.326
r_nbd_other0.249
r_symmetry_hbond_refined0.246
r_symmetry_vdw_refined0.238
r_nbd_refined0.229
r_xyhbond_nbd_refined0.206
r_chiral_restr0.129
r_nbtor_other0.089
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_gen_planes_other0.004
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3058
Nucleic Acid Atoms
Solvent Atoms232
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing