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thrombin in complex with inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 298 27% PEG8000, 0.1M sodium phosphate, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.54 51.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.918 α = 90 b = 71.649 β = 99.56 c = 71.234 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2004-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 70.71 97.9 0.132 0.132 3.4 3.7 43774 43774
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.7 91.9 91.9 0.355 0.355 2.1 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.61 70.71 43774 43773 1530 97.76 0.194 0.194 0.193 0.225 RANDOM 20.495
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.77 -0.69 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.408 r_scangle_it 3.646 r_scbond_it 2.204 r_mcangle_it 1.606 r_angle_refined_deg 1.426 r_mcbond_it 0.879 r_angle_other_deg 0.793 r_symmetry_vdw_other 0.335 r_nbd_other 0.245 r_symmetry_hbond_refined 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.408 r_scangle_it 3.646 r_scbond_it 2.204 r_mcangle_it 1.606 r_angle_refined_deg 1.426 r_mcbond_it 0.879 r_angle_other_deg 0.793 r_symmetry_vdw_other 0.335 r_nbd_other 0.245 r_symmetry_hbond_refined 0.242 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.189 r_nbtor_other 0.083 r_chiral_restr 0.082 r_metal_ion_refined 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2325 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 37
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling