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Crystal structure of CLA-producing fatty acid isomerase from P. acnes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 283 2% 1,4-butanediol, 0.02M Bis-Tris, 2M lithium sulphate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 3.59 65.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.753 α = 90 b = 161.753 β = 90 c = 161.753 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.3 0.104 13.3 5.2 46145 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 73.8 0.533 1.5 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 26.96 43815 2321 97.28 0.16488 0.16301 0.20021 0.2054 RANDOM 30.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.183 r_dihedral_angle_4_deg 16.922 r_dihedral_angle_3_deg 12.576 r_dihedral_angle_1_deg 6.31 r_scangle_it 2.298 r_scbond_it 1.639 r_angle_refined_deg 1.235 r_mcangle_it 0.916 r_angle_other_deg 0.894 r_mcbond_it 0.845
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.183 r_dihedral_angle_4_deg 16.922 r_dihedral_angle_3_deg 12.576 r_dihedral_angle_1_deg 6.31 r_scangle_it 2.298 r_scbond_it 1.639 r_angle_refined_deg 1.235 r_mcangle_it 0.916 r_angle_other_deg 0.894 r_mcbond_it 0.845 r_symmetry_vdw_other 0.229 r_nbd_refined 0.2 r_nbd_other 0.198 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.134 r_mcbond_other 0.125 r_symmetry_vdw_refined 0.084 r_nbtor_other 0.082 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3465 Nucleic Acid Atoms Solvent Atoms 559 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing