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Acetobacter turbidans alpha-amino acid ester hydrolase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MPX pdb entry 1MPX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 15-17% PEG 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.369 α = 90 b = 275.594 β = 90.11 c = 197.953 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.933 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 85.5 0.091 598744 598744
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 67.8 0.341
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1MPX 2 40 504379 504379 25420 75.39 0.20051 0.20051 0.19878 0.1886 0.23477 0.221 RANDOM, BUT SUCH THAT TWIN-RELATED REFLECTIONS ARE ALWAYS IN THE SAME SUBSET 15.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.05 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.467 r_dihedral_angle_4_deg 14.367 r_dihedral_angle_3_deg 12.349 r_scangle_it 3.664 r_angle_other_deg 3.386 r_dihedral_angle_1_deg 2.715 r_scbond_it 2.501 r_angle_refined_deg 1.663 r_mcangle_it 1.646 r_mcbond_it 1.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.467 r_dihedral_angle_4_deg 14.367 r_dihedral_angle_3_deg 12.349 r_scangle_it 3.664 r_angle_other_deg 3.386 r_dihedral_angle_1_deg 2.715 r_scbond_it 2.501 r_angle_refined_deg 1.663 r_mcangle_it 1.646 r_mcbond_it 1.066 r_symmetry_vdw_other 0.417 r_symmetry_vdw_refined 0.3 r_symmetry_hbond_other 0.296 r_nbd_other 0.234 r_nbd_refined 0.196 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.123 r_nbtor_other 0.114 r_chiral_restr 0.105 r_xyhbond_nbd_other 0.081 r_bond_refined_d 0.008 r_gen_planes_other 0.004 r_gen_planes_refined 0.003 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 77056 Nucleic Acid Atoms Solvent Atoms 3654 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing