☰ Navigation Tabs
Crystal structure of the interleukin-4 variant F82D
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 52% Ammonium sulfate, 0.1M Sodium citrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.9 61.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.968 α = 90 b = 90.968 β = 90 c = 46.086 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARRESEARCH 2002-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9183 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 28.7 100 0.08 26.6 14.4 26097 26060
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.9 0.291 5.7 9.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1HIK 1.7 20 21822 20694 1100 99.88 0.2276 0.2276 0.22652 0.2315 0.24811 0.2589 RANDOM 34.813
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.723 r_scangle_it 3.983 r_scbond_it 2.399 r_mcangle_it 1.498 r_angle_refined_deg 1.322 r_mcbond_it 0.785 r_symmetry_hbond_refined 0.336 r_symmetry_vdw_refined 0.324 r_xyhbond_nbd_refined 0.255 r_nbd_refined 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.723 r_scangle_it 3.983 r_scbond_it 2.399 r_mcangle_it 1.498 r_angle_refined_deg 1.322 r_mcbond_it 0.785 r_symmetry_hbond_refined 0.336 r_symmetry_vdw_refined 0.324 r_xyhbond_nbd_refined 0.255 r_nbd_refined 0.249 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1041 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling CNS phasing