2B8A

High Resolution Structure of the HDGF PWWP Domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESYHDGF U-15N,13C; 20 mM phosphate buffer 6.5; 50 mM KCl; 1 mM DTT90% H20, 10% D2O50 mM6.5ambient301
23D_15N-separated_NOESYHDGF U-15N,13C; 20 mM phosphate buffer 6.5; 50 mM KCl; 1 mM DTT90% H20, 10% D2O50 mM6.5ambient301
3HNHAHDGF U-15N,13C; 20 mM phosphate buffer 6.5; 50 mM KCl; 1 mM DTT90% H20, 10% D2O50 mM6.5ambient301
4TROSY-HNCO with HN couplingsHDGF U-15N,13C; 20 mM phosphate buffer 6.5; 200 mM NaCl; 1 mM DTT90% H20, 10% D2O200 mM6.5ambient301
5TROSY-HNCO with NCo couplingsHDGF U-15N,13C; 20 mM phosphate buffer 6.5; 200 mM NaCl; 1 mM DTT90% H20, 10% D2O200 mM6.5ambient301
6TROSY-HNCO with CoCa couplingsHDGF U-15N,13C; 20 mM phosphate buffer 6.5; 200 mM NaCl; 1 mM DTT90% H20, 10% D2O200 mM6.5ambient301
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealingthe structure is baed on 1415 distance restraints, 79 dihedral angles, 23 hydrogen bonds, 54 JHNHA couplings and 258 RDCsNMRPipe
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number400
Conformers Submitted Total Number26
Representative Model1 (n/a)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.3Delaglio et al
2data analysisSparky3.110Goodard and Kneller
3refinementCNS1.1Brunger et al
4data analysisCYANA1.0.5Guntert et al.