X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICRODIALYSIS6.52771 M glucose, 0.01 M sodium phosphate, pH 6.5, MICRODIALYSIS, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.754.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90α = 90
b = 89.3β = 90
c = 67.4γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293FILMFILMMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEELLIOTT GX-6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1346.1893105991059953.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPea lectin. Einspahr et al. (1986) J.Biol.Chem. 261:16518-16527.346.18105991059954592.710.2270.2270.2240.3RANDOM25.733
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.4-2.20.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.086
r_dihedral_angle_3_deg21.966
r_dihedral_angle_4_deg21.472
r_dihedral_angle_1_deg8.865
r_scangle_it3.057
r_angle_refined_deg2.056
r_scbond_it1.842
r_mcangle_it1.692
r_mcbond_it0.95
r_nbtor_refined0.347
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.086
r_dihedral_angle_3_deg21.966
r_dihedral_angle_4_deg21.472
r_dihedral_angle_1_deg8.865
r_scangle_it3.057
r_angle_refined_deg2.056
r_scbond_it1.842
r_mcangle_it1.692
r_mcbond_it0.95
r_nbtor_refined0.347
r_symmetry_hbond_refined0.32
r_nbd_refined0.303
r_symmetry_vdw_refined0.291
r_xyhbond_nbd_refined0.233
r_metal_ion_refined0.188
r_chiral_restr0.117
r_bond_refined_d0.02
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3556
Nucleic Acid Atoms
Solvent Atoms8
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
ROCKSdata scaling
CROWTHERphasing