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ferredoxin-NADP reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1B2R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 2M ammonium sulfate, 5% isopropanol, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.78 30.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.985 α = 90 b = 121.985 β = 90 c = 74.729 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2003-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.1000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 90 100 0.095 22.5 7.9 22511 22511 49.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 100 0.481 4.08 2219
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1b2r 2.499 47.14 21704 21704 2149 96.501 0.184 0.184 0.1785 0.2162 0.2354 0.2525 random 38.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.277 0.139 0.277 -0.416
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.464 r_dihedral_angle_4_deg 22.375 r_dihedral_angle_3_deg 16.912 r_scangle_it 7.543 r_scbond_it 5.949 r_dihedral_angle_1_deg 5.837 r_mcangle_it 4.672 r_mcbond_it 4.184 r_scangle_other 3.9 r_mcangle_other 3.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.464 r_dihedral_angle_4_deg 22.375 r_dihedral_angle_3_deg 16.912 r_scangle_it 7.543 r_scbond_it 5.949 r_dihedral_angle_1_deg 5.837 r_mcangle_it 4.672 r_mcbond_it 4.184 r_scangle_other 3.9 r_mcangle_other 3.2 r_scbond_other 2.367 r_angle_refined_deg 1.914 r_angle_other_deg 0.968 r_mcbond_other 0.967 r_symmetry_vdw_refined 0.227 r_symmetry_vdw_other 0.215 r_nbd_refined 0.214 r_nbd_other 0.214 r_nbtor_refined 0.195 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.179 r_nbtor_other 0.097 r_chiral_restr 0.095 r_xyhbond_nbd_other 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4680 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 161
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection