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Structural Basis for UTP Specificity of RNA Editing TUTases from Trypanosoma Brucei
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 3 M KCl, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.1 60.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.006 α = 90 b = 91.006 β = 90 c = 162.173 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2004-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 50 43582
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.05 50 41267 2198 99.88 0.18895 0.18695 0.1924 0.22734 0.1961 RANDOM 34.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.518 r_dihedral_angle_4_deg 17.257 r_dihedral_angle_3_deg 15.478 r_dihedral_angle_1_deg 8.981 r_scangle_it 3.025 r_scbond_it 1.933 r_angle_refined_deg 1.514 r_mcangle_it 1.247 r_mcbond_it 0.765 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.518 r_dihedral_angle_4_deg 17.257 r_dihedral_angle_3_deg 15.478 r_dihedral_angle_1_deg 8.981 r_scangle_it 3.025 r_scbond_it 1.933 r_angle_refined_deg 1.514 r_mcangle_it 1.247 r_mcbond_it 0.765 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.128 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3582 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement