2B1Y

Crystal Structure of Protein of Unknown Function ATU1913 from Agrobacterium tumefaciens str. C58


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52982M NH4Sulphate,5% iso-Propanol, 2Mm K/Na Tartrate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3747.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.428α = 90
b = 99.646β = 90
c = 55.827γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2005-08-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9795APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85093.80.05416.93.7201201081122
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.861000.1699

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.849.8110167968847994.020.21290.21290.21250.2207RANDOM35.442
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.21-1.05-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.011
r_dihedral_angle_4_deg22.144
r_dihedral_angle_3_deg14.094
r_dihedral_angle_1_deg5.594
r_scangle_it4.562
r_scbond_it3.082
r_mcangle_it1.781
r_angle_refined_deg1.557
r_mcbond_it1.179
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.011
r_dihedral_angle_4_deg22.144
r_dihedral_angle_3_deg14.094
r_dihedral_angle_1_deg5.594
r_scangle_it4.562
r_scbond_it3.082
r_mcangle_it1.781
r_angle_refined_deg1.557
r_mcbond_it1.179
r_nbtor_refined0.309
r_symmetry_vdw_refined0.213
r_nbd_refined0.206
r_symmetry_hbond_refined0.176
r_xyhbond_nbd_refined0.15
r_chiral_restr0.106
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms795
Nucleic Acid Atoms
Solvent Atoms71
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-2000data scaling
SOLVEphasing